VISDB Viral Integration Site DataBase

VIS ID

TVIS10008849

Fusion event

HBV-SCN3A integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

2179

Orient

+

Integrated sequence

CTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATA| |TGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGAT

Chromosome

chr2

Cytoband

q24.3

Reference genome

Start

End

166011561/165155051 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-1-3p

Nearest miRNA

hsa-mir-128-1/Upstream/4747169; hsa-mir-10b/Downstream/3427892;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/312668, chr2-CpG: 94/Downstream/638348

Upstream sequence

TGACAAGTAAGAGCACTGAACCTTTAAATCCTTTCAGTGGGATTCCATTTGCACTGCAGCTATTCTCCATACCATCTATAGATGACTTTTGCTCCCCTCC

Downstream sequence

CCTTCTAGTCTCAGTTAATAGCTAGAGCTTTAATTTGAAATTTTCACATCAACATCACTGATTTTTAAAATCTTTTAACGTGCTGTTTATATACCAACAA