Basic Information
VIS ID
TVIS10008853
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
1252
Orient
-
Integrated sequence
TTGCCCGGCAACGGCCAGGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTTC| |GGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTA
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
194633265/193768541 (Hg38)
End
194633265/193768541 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/4635430; hsa-mir-1244-1/Downstream/13014693;
Nearest TSS
ENST00000437798/Upstream/1018574; ENST00000569293/Downstream/129826;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1572455, chr2-CpG: 150/Downstream/1888290
Nearby gene
PCGEM1(-991640) ; SLC39A10(+1888267) ;
Upstream sequence
ATGCATATTTAATAAATAACTATGCTTATGAAACCACGTAGTATATTTAAACTGTGAAGCAACTCAAAAAAGTACTTTGCTTAAGGTGTTGTGTAGGGGG
Downstream sequence
ATGGAGGAGGAAGACAATAAGCATAGAAACAAATAATGCTATAAAGGTAAGTAGGAATACATGCCAAAAAGAAAAAATGTTTCTGTAAATGTGTGGTATT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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