Basic Information
VIS ID
TVIS10008871
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
474
Orient
-
Integrated sequence
CTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTT| |TGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTA
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
216309909/215445186 (Hg38)
End
216309909/215445186 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/1687027; hsa-mir-1244-1/Downstream/2455327;
Nearest TSS
ENST00000437798/Upstream/8933; ENST00000447835/Downstream/8521;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/9049, chr2-CpG: 51/Downstream/567990
Nearby gene
FN1(-9118) ; LINC00607(+166377) ;
Upstream sequence
acctaaatgatctgcccgccttggcctccgaaagtgctgggattacaagtgtgagccactgcacctggccTCAACTTACATTACTTATTTTTCAAAAACT
Downstream sequence
AGAGAATCCATTAATTTTGGCTTGTTTGAATTTAAAAGTGATTATAATATTTTTGTTAGTTATATATGAGCAGTATTTCACTACAGCTCATCTTAAAGAT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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