Basic Information
VIS ID
TVIS10008918
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
336
Orient
+
Integrated sequence
AATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCAC| |TCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCT
Host Sequence
Chromosome
chr3
Cytoband
p14.2
Reference genome
End
63704112/63718436 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/3100566; hsa-mir-12124/Downstream/3507028;
Nearby gene
SNTN(-53221) ; C3orf49(+100929) ;
Upstream sequence
agggttgatggttaaagcaaaaattataatactaactgatacagtttaaatatatgtacagaaaatatttaagtctattaaattataagcagagagaata
Downstream sequence
TACTTCATTTCAACTTGTTTATTTGATTTGTTTATTGTAACTCTTCTATTTAGATGAAATGGACCTTGCTAATATTCTTTATCCTTACATTTACCTATGT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate