VISDB Viral Integration Site DataBase

VIS ID

TVIS10008951

Fusion event

HBV-FBXL17 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

2052

Orient

+

Integrated sequence

GTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCT| |CACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACC

Chromosome

chr5

Cytoband

q21.3

Reference genome

Start

End

107313993/107978292 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-186-3p ; hsa-mir-548p ; hsa-mir-548b-3p ; hsa-mir-330-3p

Nearest miRNA

hsa-mir-10397/Upstream/7161727; hsa-mir-103a-1/Downstream/2535537;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/305802, chr5-CpG: 220/Downstream/402316

Upstream sequence

ttaggttcacagcaaattttagtggaaggtacagagatttcccatagtctccctgccccacacatgcacagccttcctcatcgtcaacatctcccaccag

Downstream sequence

tgaagcagggatgataacaatccctccctaaaactgctcccactccttgtttgggggctgaaactgcctttgtaaaactaatgaaaggccacaaggttag