VISDB Viral Integration Site DataBase

VIS ID

TVIS10008961

Fusion event

HBV-IQGAP2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|large S protein|

Start

2852

Orient

-

Integrated sequence

CACACTCTATGGAAGGCGGGTATATTATATAAGAGAGAAACAACACATAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGATCTACAGCATG| |GGGCAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTTCA

Chromosome

chr5

Cytoband

q13.3

Reference genome

Start

End

75888834/76593009 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-499a-5p ; hsa-mir-208b-3p ; hsa-mir-208a-3p ; hsa-mir-549a ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-548e-5p ; hsa-mir-92a-1-5p

Nearest miRNA

hsa-mir-10397/Upstream/3714346; hsa-mir-103a-1/Downstream/6247146;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/188674, chr5-CpG: 111/Downstream/122286

Nearest cancer related gene

IQGAP2(TSG, No orient, 0)

Upstream sequence

ATATATAAGAATGGGTTATTTGCCTAAGAATACACTTAAGTCATAGTGTTAATGAGAATCCGAGAAAGAGGGTAGGGGAGGAAGTGTAATGCCaacaaga

Downstream sequence

TGTATACTTGGAAAACTGCCTTATACAATGAAAAATCTACTCAGTGTCAGTGTTGCTCTTAATTATGGTGCAGCATTTGGCAGTTTCCCACTGGGCTTTT