Basic Information
VIS ID
TVIS10008983
Fusion event
HBV-LOC105375451 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
precore/core protein|Core and e antigen|Polymerase|
Start
2327
Orient
+
Integrated sequence
CTTTTGGAAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAAC| |ACTTCCGGAGACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGA
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
End
110157970/110517913 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10525/Upstream/8046382; hsa-mir-10399/Downstream/4135432;
Nearby gene
EIF3IP1(-557700) ; IMMP2L(+145136) ;
Upstream sequence
TTGGTGACACATGGAGGCACTGATTGTTTCCTAAGGGCTCTTTTACGAGATCTCCAATAAAGTTCTAAGCGGATCATGCCTGTTTGGGGAAAGATAACAC
Downstream sequence
actgtaacctctgcctctgcctcctgagtagctgggactacaggcatgtgccaccatgcctggctaatttttgtgttttttttcagcagagacagggttt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate