Basic Information
VIS ID
TVIS10009018
Fusion event
HBV-chr9 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
1005
Orient
-
Integrated sequence
TCCTTGCCACAAGAACACATCATACAAAAAATCAAAGAATGTTTTAGAAAACTTCCTATTAACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGTGG| |GTCTTTTGGGTTTTGCTGCCCCTTTTACACAATGTGGTTATCCTGCGTTGATGCCTTTGTATGCATGTATTCAATCTAAGCAGGCTTTCACTTTCTCGCC
Host Sequence
Chromosome
chr9
Cytoband
q13
Reference genome
GRCh37/hg19
Start
45077550/61941398 (Hg38)
End
45077550/61941398 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA9F
Nearest miRNA
hsa-mir-101-2/Upstream/20707563; hsa-let-7a-1/Downstream/8868577;
Nearest TSS
ENST00000422679/Upstream/30376; ENST00000417850/Downstream/87028;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/49252, chr9-CpG: 31/Downstream/48640
Nearby gene
FAM27C(-86058) ;
Upstream sequence
CAGCCCCGGCATTCCTGGAAAACAACCTTACAGACCAACTCAGGCTCCTGCTGCAGCCCCATGCTCTGTGCCCTCCCTGACTCTTGGGGCAGCTGTAAAG
Downstream sequence
GGGCTTCTAGGCTCTGTGGCTGGAGATTCGCGTCCAGGAGAACTCAGGTCCGAGGGTAGGCAGAGAAAAACAGTGTAAGAGTGCCAACAGAATGCTTTGA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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