VISDB Viral Integration Site DataBase

VIS ID

TVIS10009050

Fusion event

HBV-LAMC2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1803

Orient

-

Integrated sequence

CATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTG| |CGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCA

Chromosome

chr1

Cytoband

q25.3

Reference genome

Start

End

183166803/183197668 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-199b-5p ; hsa-mir-148b-3p ; hsa-mir-7-5p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-29c-3p ; hsa-mir-146a-5p ; hsa-mir-622

Nearest miRNA

hsa-mir-101-1/Upstream/2759278; hsa-mir-1182/Downstream/9518660;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/173433, chr1-CpG: 114/Downstream/219197

Upstream sequence

gggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgctgtgagccgagatcgtgctactgcactccagtctgggcgacagagcgagact

Downstream sequence

ccgtctcaaaaaaaaaaaaaaagtaaaagtaataagtaaataagtaaataaataaagtggatggcagacatgaggacctgaagttgaggatgaagtttgg