Basic Information
VIS ID
TVIS10009061
Fusion event
HBV-chr15 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1878
Orient
+
Integrated sequence
GAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAG| |CTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTT
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
68552072/68259734 (Hg38)
End
68552072/68259734 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/1762700; hsa-mir-11181/Downstream/542116;
Nearest TSS
ENST00000557528/Upstream/2523; ENST00000570067/Downstream/8559;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/2464, chr15-CpG: 120/Downstream/17902
Nearby gene
CLN6(-29992) ; FEM1B(+18069) ;
Upstream sequence
TTAAACATCTATTGAGTACAGTGTTTTGCATGGATTATAAAATACTTGCTCCCCATGACATTATATAATCATtgaggaaatagagtcaaggtagttaaaa
Downstream sequence
tataagcatgaagtcacacaagcaggaagtggtagaatccagatttgaatccaggtcaagccagagcatgcaaccactatgctgtgttatCTCCTAATGC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate