VISDB Viral Integration Site DataBase

VIS ID

TVIS10009064

Fusion event

HBV-EFTUD2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|

Start

1847

Orient

+

Integrated sequence

GAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTC| |TTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTA

Chromosome

chr17

Cytoband

q21.31

Reference genome

Start

End

42939709/44862341 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-1-3p ; hsa-mir-193b-3p ; hsa-mir-363-3p ; hsa-mir-92a-3p ; hsa-mir-218-5p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-500b-3p ; hsa-mir-6514-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-502-5p ; hsa-mir-7111-3p ; hsa-mir-4268 ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-627-3p ; hsa-mir-4679 ; hsa-mir-4677-3p ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183

Nearest miRNA

hsa-mir-1180/Upstream/654502; hsa-mir-10226/Downstream/72277;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/31648, chr17-CpG: 37/Downstream/37001

Upstream sequence

ctgggcaatatagtgagacattgtctctacaaaaaatttaaaaattagccagacatagtggtgtgtgcttgtagttccagctactcaggaggctgaggtg

Downstream sequence

gaaggactgcttgagcccaggaggcggaggtcgcagtgagctgagattgtgccactgcactctggcctaggagacagagtgagaccctgtctcaaaacaa