Basic Information
VIS ID
TVIS10009068
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
1916
Orient
+
Integrated sequence
TGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCC| |TTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTAT
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
GRCh37/hg19
Start
1856447/1814763 (Hg38)
End
1856447/1814763 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Downstream/3435414;
Nearest TSS
ENST00000440867/Upstream/413478; ENST00000490876/Downstream/172707;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1505553, chr3-CpG: 182/Downstream/283582
Nearby gene
CNTN6(-411169) ; CNTN4(+284103) ;
Upstream sequence
AGATCTGATTGCCCCCCTTCTCTGGCCGCTGCCCGGCCATCAGTTTATCTCGCCAACATTGTGTTAGCCAGTGATTCGCAGGCGCTTCTGTGTCTGCTCC
Downstream sequence
ccgataaaggcacactggaaaccctccttttattcttcttccattataaagcttgcccacacctctgaaagcttgcccactcctctgcctggcttggagt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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