VISDB Viral Integration Site DataBase

VIS ID

TVIS10009081

Fusion event

HBV-CSPP1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

1349

Orient

-

Integrated sequence

TTCGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTC| |CTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATC

Chromosome

chr8

Cytoband

q13.2

Reference genome

Start

End

68064031/67151796 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-505-5p ; hsa-mir-454-3p

Nearest miRNA

hsa-mir-124-1/Upstream/2772539; hsa-mir-10400/Downstream/7396747;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/86583, chr8-CpG: 91/Downstream/191098

Upstream sequence

CATTGTTTTAAAAATCTCTTCCTAAAACCCTTTTGAATTCCTCTATTAAATCTATGCCCTTGTTAATTGTCCTAGGCATAATTGTCTCTCTCACCTGGTT

Downstream sequence

ATGAATTAATTggctgggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcatgaggccaggagatcgagaccatcct