Basic Information
VIS ID
TVIS10009085
Fusion event
HBV-chr11 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
1314
Orient
-
Integrated sequence
TTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTTCGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTG| |GAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGG
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
80228228/80517184 (Hg38)
End
80228228/80517184 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/1094958; hsa-let-7a-2/Downstream/1373557;
Nearest TSS
ENST00000527297/Upstream/189273; ENST00000526154/Downstream/245642;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1076024, chr11-CpG: 25/Downstream/2172359
Nearby gene
TENM4(-1076533) ; MIR4300(+1373555) ;
Upstream sequence
TGTAATCAAAAAGCAGACTTAAAGATATCATTTTAATTATTCATCtgatatggtttggatctgtgttcccacctaaatctcatgttgaaatgtcaacctc
Downstream sequence
aatgctgaaggtggggcttggtgggaggtgtttggatcatggggctggtttctcatggtttaacaccacccctggtgctgtcattgcgatagtaagtgct
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate