Basic Information
VIS ID
TVIS10009088
Fusion event
HBV-chr15 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
1948
Orient
+
Integrated sequence
TGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTAC| |TCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTC
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
53655145/53362948 (Hg38)
End
53655145/53362948 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/1085748; hsa-mir-11181/Downstream/2009992;
Nearest TSS
ENST00000557528/Upstream/246583; ENST00000561210/Downstream/178132;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/556669, chr15-CpG: 33/Downstream/396510
Nearby gene
ONECUT1(-572936) ; WDR72(+150793) ;
Nearest cancer related gene
ONECUT1(TSG, -572936) ;
Upstream sequence
TGCTAGTCTATACTGTTTATTGCTTTACTTCCAATGTTCACGCTCCTTACAGCCTGAAATTATTAAATAGCACTTATGACTGGCAAGGAATCACACTCTG
Downstream sequence
AGTTTCTAATTAGCACAGACAAACCCTTGTTGGGCTAGAGGGGAAACATTTAATGAAGAATTACACAATAAGGTCCCATATTCGCACCAACCTGTTCTCT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate