Basic Information
VIS ID
TVIS10009103
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1821
Orient
+
Integrated sequence
TGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAA| |CTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATA
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
237091852/236928552 (Hg38)
End
237091852/236928552 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/1075492; hsa-mir-3123/Downstream/542567;
Nearest TSS
ENST00000473358/Upstream/34211; ENST00000609253/Downstream/75866;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/132650, chr1-CpG: 169/Downstream/113274
Nearby gene
MTR(-24571) ; RYR2(+113850) ;
Upstream sequence
GTGTCTGAACCTCCTTCCCTGCCTCACACGGTGCCTAGCATTTGGGAAGTGACAAAGTGCCTAGAAAGAAAAGCAGCTGTCCTCTTCCTTGCTCCTTTTA
Downstream sequence
TCTTCCAGCCACTGAGAGATTAACTTTTAACTCTCTAGTAGTTACTCCAGGACTACTTAAGTAATGATTGTGTCATGACCGAAGTTGGCTGCCTTTATTC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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