Basic Information
VIS ID
TVIS10009124
Fusion event
HBV-chr13 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|middle S protein|
Start
133
Orient
+
Integrated sequence
CCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGA| |GGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCT
Host Sequence
Chromosome
chr13
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
72617346/72043208 (Hg38)
End
72617346/72043208 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/5824884; hsa-mir-1267/Downstream/5654804;
Nearest TSS
ENST00000623511/Upstream/176016; ENST00000618209/Downstream/684479;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/175564, chr13-CpG: 91/Downstream/683884
Nearby gene
DACH1(-176016) ; MZT1(+665149) ;
Nearest cancer related gene
DACH1(TSG, -176016) ;
Upstream sequence
GTTGAATGCTGAACACATGATACAACCACAAGGCAAGAAGAGTAGGAAGTCCAGGGGTGAGGTGAACTAACCCCGGGTCTTAAATTTGAGAACTCTTATT
Downstream sequence
TTTAGGATAAATGTATTGGACCAACTTGTTTTTAAGGCTGCTTTCAACTATAGTTATAACACACACTTTGTTGCAGAACATTTTCATGGAAATGATCCAG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate