Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10009138
Fusion event
HBV-C16orf52 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
Polymerase|
Start
903
Orient
-
Integrated sequence
ACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAACAAAACAAAGAGATGGGGTTACTCTCTAAATTTTATGGGTTATGTCATTGGATGTTATG| |GGTCCTTGCCACAAGAACACATCATACAAAAAATCAAAGAATGTTTTAGAAAACTTCCTATTAACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGT
Host Sequence
Chromosome
chr16
Cytoband
p12.2
Reference genome
Start
End
22051663/22040342 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/534207; hsa-mir-11401/Downstream/2162774;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/31606, chr16-CpG: 28/Downstream/122015
Upstream sequence
gaacaacacacactagggcctatccgagggtggaagaagggagaggatcaggaaaaaataactaataggtactaggcttaatacctggatgatgaaatga
Downstream sequence
tctgtacaaccaacccccataacacaagtttacctatgtaacctgcacatgtacccctgaacttaaaagtattttaaaaattacaaagaaGGATGATTTT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.