Basic Information
VIS ID
TVIS10009165
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1827
Orient
-
Integrated sequence
AAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAAT
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
30327804/30286313 (Hg38)
End
30327804/30286313 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/4621374; hsa-let-7g/Downstream/875391;
Nearest TSS
ENST00000440867/Upstream/298240; ENST00000450746/Downstream/238432;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1709834, chr3-CpG: 88/Downstream/320182
Nearby gene
RBMS3(-275918) ; TGFBR2(+320190) ;
Nearest cancer related gene
RBMS3(TSG, -275918) ; TGFBR2(TSG, +320190) ;
Upstream sequence
catgagatcaactttttaagatcccacacgtgagtgacagaatgtggtatttgtcttttttcacttttctaacctagttatttcacttaacatagcaatc
Downstream sequence
GTAAGATACAGTTGTCCTCAGAAGCAAAGTTGATTCTATGCCTAGAATATAAGCAGGCAAAAAAGGCTGAGAAAAGTCTGGGAAATGTTGATTTCATGGT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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