MAPK10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10009177
Fusion event
HBV-MAPK10 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|precore/core protein|
Start
1817
Orient
-
Integrated sequence
TGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCAT| |GCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCT
Host Sequence
Chromosome
chr4
Cytoband
q21.3
Reference genome
End
87137700/86216547 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/494014; hsa-mir-1243/Downstream/325935;
Nearest cancer related gene
MAPK10(TSG, No orient, 0)
Upstream sequence
ctcgtgttgattcccttccattccattccattccattccattccattccattccattccacttgggttgattccattccgttcctttcgattgcattcca
Downstream sequence
aacttctactaaagaagtaatcaaatatctatattttaatccataagattaatccctaataatgtttaccacagcattatttataataaaataatagaaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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