Basic Information
VIS ID
TVIS10009210
Fusion event
HBV-chrX integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1828
Orient
+
Integrated sequence
AGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTC| |ACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATT
Host Sequence
Chromosome
chrX
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
53858724/53832226 (Hg38)
End
53858724/53832226 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/274952; hsa-mir-105-1/Downstream/1619269;
Nearest TSS
ENST00000429181/Upstream/145497; ENST00000375151/Downstream/112338;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/145377, chrX-CpG: 102/Downstream/211653
Nearby gene
HUWE1(-145027) ; PHF8(+104389) ;
Upstream sequence
ctttgggaggccgaggcaggcggatcacgaggtcaggaaatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaataaaaaaaaatta
Downstream sequence
agaagaagtcgtgggctgagaccatctctctcagcactgagctggcccagtgtaagggggtggcttacgcaggtaaagtgaaattccttttcttacttgt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate