Basic Information
VIS ID
TVIS10009260
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
2646
Orient
+
Integrated sequence
CTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTTAATGAGAAAAGAAGATTGCAATTGATTATGCCTGC| |CAGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAACTAGACAC
Host Sequence
Chromosome
chr3
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
16144581/16103074 (Hg38)
End
16144581/16103074 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/229225; hsa-let-7g/Downstream/830122;
Nearest TSS
ENST00000440867/Upstream/243303; ENST00000470031/Downstream/71575;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/242591, chr3-CpG: 69/Downstream/161555
Nearby gene
MIR563(-229225) ; GALNT15(+71603) ;
Upstream sequence
TTCTTATACATACTAAGCTTTTTGGATATTTAAAAGACCTTTTCacaaatctgtgaagatggcaggctatgttactatttttcctgtttcgtatatatat
Downstream sequence
TCTTTCATGACATTAAGTGAACTTTCCAGAAGTACCCAGTCTCCAAGCCTCCCCCTGTCTTCCAGACAGTACAAGGAAATCTGGAGATATATAATCCACA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate