Basic Information
VIS ID
TVIS10009261
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|Polymerase|
Start
1563
Orient
-
Integrated sequence
TCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTT| |CTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGG
Host Sequence
Chromosome
chr3
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
16148514/16107007 (Hg38)
End
16148514/16107007 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/233158; hsa-let-7g/Downstream/826189;
Nearest TSS
ENST00000440867/Upstream/247236; ENST00000470031/Downstream/67642;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/246524, chr3-CpG: 69/Downstream/157622
Nearby gene
MIR563(-233158) ; GALNT15(+67670) ;
Upstream sequence
acaaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgca
Downstream sequence
agcctcttataaagccatcaaatctcatgagaactcactatcatgagaacagcatgggggATTCAATTATAATAAATGCCATCatataatatatataatt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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