Basic Information
VIS ID
TVIS10009262
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
707
Orient
+
Integrated sequence
CCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGT| |AGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCA
Host Sequence
Chromosome
chr3
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
54012109/53978082 (Hg38)
End
54012109/53978082 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1131530; hsa-mir-12124/Downstream/1874410;
Nearest TSS
ENST00000440867/Upstream/86094; ENST00000478466/Downstream/144465;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/85935, chr3-CpG: 46/Downstream/109515
Nearby gene
SELENOK(-86120) ; CACNA2D3(+144584) ;
Nearest cancer related gene
CACNA2D3(TSG, +144584) ;
Upstream sequence
gttatggttagggttaagggttagggttaggggttaggggttaagggttaggggtaggataagggtagggttagggttagggttagggttagggtaagga
Downstream sequence
tggtcaggtctttcccttcccacgaggccatatttcagactatcacatggggagaaaccttggacaatacctggctttcctaggcagaggtccctgcagc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate