Basic Information
VIS ID
TVIS10009277
Fusion event
HBV-chrX integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
707
Orient
+
Integrated sequence
CCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGT| |AGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCA
Host Sequence
Chromosome
chrX
Cytoband
q27.3
Reference genome
GRCh37/hg19
Start
144802927/145721409 (Hg38)
End
144802927/145721409 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRAXA
Nearest miRNA
hsa-let-7f-2/Upstream/4795178; hsa-mir-105-1/Downstream/271341;
Nearest TSS
ENST00000429181/Upstream/474581; ENST00000370490/Downstream/96423;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/89609, chrX-CpG: 98/Downstream/96436
Nearby gene
SPANXN1(-465199) ; SLITRK2(+96420) ;
Upstream sequence
ggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggtt
Downstream sequence
cggtcaggtctttcccttcccacaaggccatatttcagactatcacatggggagaaaccttggacaatacctggctttcctaggcagaggtccctgcggc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate