Basic Information
VIS ID
TVIS10009302
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1878
Orient
+
Integrated sequence
GAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAG| |CTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTT
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
39294296/38828624 (Hg38)
End
39294296/38828624 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/739295; hsa-mir-101-1/Downstream/1925731;
Nearest TSS
ENST00000473358/Upstream/12645; ENST00000456813/Downstream/19450;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/9720, chr1-CpG: 72/Downstream/30519
Nearby gene
LINC01343(-613857) ; RRAGC(+10719) ;
Upstream sequence
tttgaaaaaaatacccatttgataaagagaaagggaagcttattattttagtgttcatttcttctattattagtgaggttttatgggttttcatggtttt
Downstream sequence
ggcctcttctacttcgtgtcacacactaatatctttccctcattttgttttagaatgtattttttactgatttgtaaaattgtataaaaaatattaaCTT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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