Basic Information
VIS ID
TVIS10009323
Fusion event
HBV-chr11 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
Polymerase|large S protein|
Start
2893
Orient
-
Integrated sequence
AACACATAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGATCTACAGCATGGGGCAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCC| |CGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGCCAACAAGGTAGGA
Host Sequence
Chromosome
chr11
Cytoband
q11
Reference genome
End
51590967/54528311 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/6431453; hsa-let-7a-2/Downstream/2215562;
Nearby gene
OR4C46(-74756) ;
Upstream sequence
tgaacacaaacatcacaaagtagtttctgagaatgcttctgtttagtttttatgtgaagatgaacccgtttccaacgaaatcttcaaagaggtccacata
Downstream sequence
tccacttgcagattccaaagaaagggagtttcaaaactgctccgtcaacaggattgttcaactctgtgagttgaatgcagtcctcacaggaaacattctg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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