hsa-mir-3202 _LIHC.png
R3HDM2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10009326
Fusion event
HBV-R3HDM2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|precore/core protein|
Start
1827
Orient
-
Integrated sequence
AAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAAT
Host Sequence
Chromosome
chr12
Cytoband
q13.3
Reference genome
End
57807845/57414062 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1228/Upstream/219486; hsa-let-7i/Downstream/98626;
Nearby gene
R3HDM2(-103599) ; INHBC(+20698) ;
Upstream sequence
agcctcctgagtagctgagattacaggcacacaccaccatacccagctaaatttttttgtatttttagtagagagcgggtttcatcatgttggtcaggct
Downstream sequence
ggtcttgaactcctgacctcaaatgatccacccacctcagcctcccagagtgctgggatcacaggcgtgagccaccttgcccagccCACTCTATCTTTTT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate