Basic Information
VIS ID
TVIS10009342
Fusion event
HBV-chr18 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
567
Orient
+
Integrated sequence
GCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGT| |TGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCT
Host Sequence
Chromosome
chr18
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
56872676/59205444 (Hg38)
End
56872676/59205444 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA18B
Nearest miRNA
hsa-mir-1-2/Upstream/754286; hsa-mir-5011/Downstream/7876140;
Nearest TSS
ENST00000575820/Upstream/49839; ENST00000420468/Downstream/14724;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/65251, chr18-CpG: 57/Downstream/14415
Nearby gene
SEC11C(-46613) ; GRP(+14724) ;
Upstream sequence
atatagaaataattattcttgctgcactttatgcaaacagtcaggccaaatatgaaagtaaagtctatttttcaaaccgctcagtcctatgatgatacgt
Downstream sequence
tttttaaacaaaaatgaggactggagagagagaaattatatttcaaaacttataatacatttgtcattaaattccaaactcactagttgtttttaatatt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate