VISDB Viral Integration Site DataBase

VIS ID

TVIS10009346

Fusion event

HBV-SIPA1L3 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

1061

Orient

+

Integrated sequence

TATTAACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTTTACACAATGTGGTTATCCTGCGTTGATGCCT| |TTGTATGCATGTATTCAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATACCTGAACCTTTACCCCGTTGCCCGGC

Chromosome

chr19

Cytoband

q13.13

Reference genome

Start

End

38664508/38173868 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-615-3p ; hsa-mir-149-5p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-210-3p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-1277-5p ; hsa-mir-4652-3p ; hsa-mir-4743-3p

Nearest miRNA

hsa-mir-10395/Upstream/2828241; hsa-let-7e/Downstream/1235755;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/90756, chr19-CpG: 21/Downstream/35825

Upstream sequence

AGCTTGGGAAGAGGAAGCGAGGCCGTCTCCTGgaactcaagggagtgcggaagccaggcagagatctgcagggcggggagcagtgcaaaggtcccaaggt

Downstream sequence

agcagtgtttctgatgtgtttgaggaacagcttccgcatggctggagcagagtgaaggagagggagtgtggaggagctgggggcagagaagagagggggg