VISDB Viral Integration Site DataBase

VIS ID

TVIS10009352

Fusion event

HBV-CNTNAP5 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1639

Orient

+

Integrated sequence

ACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATA| |TTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGG

Chromosome

chr2

Cytoband

q14.3

Reference genome

Start

End

125281704/124524127 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-574-5p ; hsa-mir-210-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-190a-3p ; hsa-mir-1277-5p ; hsa-mir-4789-5p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-466 ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-16-1-3p ; hsa-mir-1285-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-3680-5p ; hsa-mir-4798-3p ; hsa-mir-5580-3p ; hsa-mir-4643 ; hsa-mir-4789-3p

Nearest miRNA

hsa-mir-1285-2/Upstream/10802759; hsa-mir-10b/Downstream/2899410;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/498449, chr2-CpG: 51/Downstream/2131993

Upstream sequence

GTGTGTACAACATTTTGTATTTTTCCCTTTTGTTTTAAAACAAAACATATCAGAAGTAGTTCAGCCGTCTTTTTTAAAAAAGAGATTAGAATGAAGTGGC

Downstream sequence

AAGAAGAGGAAGAACAATGCTTTTTATGAATCTTCCAAGGGCTTGTATCCAGCCGAGTGAGGAGTGGGTTTGCTCTGAGAATGGCATGGACGGCAGCAGG