Basic Information
VIS ID
TVIS10009372
Fusion event
HBV-chr4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
3164
Orient
-
Integrated sequence
CATACTACAAACTTTGCCAGCAAATCCGCCTCCTGCCTCCACCAATCGCCAGTCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCAT| |CCTCAGGCCATGCAGTGG
Host Sequence
Chromosome
chr4
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
163671084/162749932 (Hg38)
End
163671084/162749932 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/3621038; hsa-mir-1305/Downstream/343642;
Nearest TSS
ENST00000502981/Upstream/9264; ENST00000504628/Downstream/358853;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/3645949, chr4-CpG: 71/Downstream/416377
Nearby gene
FSTL5(-585898) ; NAF1(+376776) ;
Upstream sequence
ccattccattccacttgggttgattccattccattcctttccattgcattccattccattgcattccattccattccattccatttcattccattctatt
Downstream sequence
gtttatgtgtttattctctcaagccttctccccaataacataagggcaggaatcatgtctttcataataaccacagcatcccctgctcttagtgcaatgc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate