Basic Information
VIS ID
TVIS10009377
Fusion event
HBV-chr5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|Polymerase|
Start
1463
Orient
-
Integrated sequence
TACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCT| |TCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTT
Host Sequence
Chromosome
chr5
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
125281030/125945337 (Hg38)
End
125281030/125945337 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/6790621; hsa-mir-103a-1/Downstream/3152351;
Nearest TSS
ENST00000502646/Upstream/452076; ENST00000507428/Downstream/234240;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1293282, chr5-CpG: 30/Downstream/478018
Nearby gene
ZNF608(-1200225) ; GRAMD2B(+414758) ;
Upstream sequence
taaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaac
Downstream sequence
AGTTAAGGTGGTTTCTTTGAACTTTAGAAGATATTATATGAATTTCTCATCATGACATACTGAAAAGAGGTAAAAAAATCACCTTTCCTCAGATTTGGAT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate