hsa-mir-550a-3-5p _LIHC.png
hsa-mir-550a-3-5p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10009397
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|precore/core protein|
Start
1828
Orient
+
Integrated sequence
AGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTC| |ACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATT
Host Sequence
Chromosome
chr2
Cytoband
q33.1
Reference genome
End
198383740/197519016 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-101-3p ; hsa-mir-18a-5p ; hsa-let-7f-2-3p ; hsa-mir-101-3p ; hsa-mir-383-5p ; hsa-mir-569 ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-2053 ; hsa-mir-4772-5p ; hsa-mir-5011-5p ; hsa-let-7f-2-3p ; hsa-mir-383-5p ; hsa-mir-569 ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-2053 ; hsa-mir-4772-5p ; hsa-mir-5011-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-219a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-508-3p ; hsa-mir-580-5p ; hsa-mir-590-3p ; hsa-mir-640 ; hsa-mir-374b-3p ; hsa-mir-4445-5p ; hsa-mir-4524a-5p ; hsa-mir-4782-3p ; hsa-mir-4524b-5p ; hsa-mir-6766-3p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-219a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-508-3p ; hsa-mir-580-5p ; hsa-mir-590-3p ; hsa-mir-640 ; hsa-mir-374b-3p ; hsa-mir-4445-5p ; hsa-mir-4524a-5p ; hsa-mir-4782-3p ; hsa-mir-4524b-5p ; hsa-mir-6766-3p ; hsa-mir-6838-5p ; hsa-mir-3662 ; hsa-mir-3662 ; hsa-mir-2681-5p ; hsa-mir-2681-5p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-550b-2-5p ; hsa-mir-5089-5p ; hsa-mir-5095 ; hsa-mir-7151-3p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-4731-5p ; hsa-mir-5589-5p ; hsa-mir-210-5p ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-6889-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1914-5p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-6769a-3p ; hsa-mir-4438 ; hsa-mir-550b-2-5p ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-210-5p ; hsa-mir-1233-3p ; hsa-mir-6889-3p ; hsa-mir-1225-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1914-5p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-6769a-3p ; hsa-mir-4438 ; hsa-mir-4711-3p ; hsa-mir-944 ; hsa-mir-33a-3p ; hsa-mir-409-3p ; hsa-mir-144-3p ; hsa-mir-4711-3p ; hsa-mir-944 ; hsa-mir-33a-3p ; hsa-mir-409-3p ; hsa-mir-144-3p ; hsa-mir-632 ; hsa-mir-4288 ; hsa-mir-6888-3p ; hsa-mir-5001-3p ; hsa-mir-378a-5p ; hsa-mir-346 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3120-5p ; hsa-mir-3653-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-632 ; hsa-mir-4288 ; hsa-mir-6888-3p ; hsa-mir-5001-3p ; hsa-mir-378a-5p ; hsa-mir-346 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3120-5p ; hsa-mir-3653-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-6843-3p ; hsa-mir-6848-3p ; hsa-mir-5587-5p ; hsa-mir-6801-5p ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-5587-5p ; hsa-mir-6801-5p ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a
Nearest miRNA
hsa-mir-10b/Upstream/8385905; hsa-mir-1244-1/Downstream/9264218;
Upstream sequence
gactaatttttttttgtatttttagtagagatggggtttcactgtgttagccaggatggtctggatctcctgatctcgtgatccgcccgtctcggcctct
Downstream sequence
gaaagtgctgggattacaggcatgagccactgcgcccagccaattttttttgtatttttagtagagatggggtttcagcgtgttagccaggttggtctcg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate