Basic Information
VIS ID
TVIS10009412
Fusion event
HBV-chr4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
3093
Orient
-
Integrated sequence
GCTGGAGCATTCGGGCTGGGTTTCACCCCACCGCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATACTACAAACTTTGCCAGCAAATCCGC| |CTCCTGCCTCCACCAATCGCCAGTCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCATCCTCAGGCCATGCAGTGG
Host Sequence
Chromosome
chr4
Cytoband
p11
Reference genome
GRCh37/hg19
Start
49117573/49115556 (Hg38)
End
49117573/49115556 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1462813; hsa-mir-1243/Downstream/3597126;
Nearest TSS
ENST00000502981/Upstream/86864; ENST00000504661/Downstream/2727444;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/128765, chr4-CpG: 24/Downstream/45884
Nearby gene
CWH43(-53478) ;
Upstream sequence
AGTGGGAATCAAGACTCTTTGGTCCATTGATATACCTCAGAGTTGGTCAATGGTTGTCCTTGGATTTGACACATGACTTTGTCCCTTACTTTAATCCTCT
Downstream sequence
tccattccaatccattgcattccattccactcgggttgtttccattccgttccattagtttccattccattccattcctttccattccattctattccat
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate