Basic Information
VIS ID
TVIS10009423
Fusion event
HBV-chr10 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
876
Orient
-
Integrated sequence
CATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAACAAAACAAAGAGATGGGGTTACTCTCTAAATT| |TTATGGGTTATGTCATTGGATGTTATGGGTCCTTGCCACAAGAACACATCATACAAAAAATCAAAGAATGTTTTAGAAAACTTCCTATTAACAGGCCTAT
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
44022671/43527223 (Hg38)
End
44022671/43527223 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10G
Nearest miRNA
hsa-mir-1265/Upstream/529542; hsa-mir-107/Downstream/1636791;
Nearest TSS
ENST00000439456/Upstream/75303; ENST00000480678/Downstream/41236;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/71234, chr10-CpG: 84/Downstream/46688
Nearby gene
ZNF487(-44664) ; ZNF239(+29122) ;
Upstream sequence
TTTGATGCTTAAATTCCTTGGTTCCTTCTGTAGTGGATTTCTTCttttttttttttattatactttaagttctagggtacatgtgcacaatgtgcaggtt
Downstream sequence
tgatgcataggtatacatgtgccatgttggtttgctgcatccatcaactcatcatttacattaggtatttctcctaatgctatccctcccccagcccccc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate