Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10009459
Fusion event
HBV-NKAIN2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1806
Orient
-
Integrated sequence
ACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGC| |ACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGG
Host Sequence
Chromosome
chr6
Cytoband
q22.31
Reference genome
End
124935920/124614774 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10398/Upstream/4599517; hsa-mir-1202/Downstream/1869857;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/810610, chr6-CpG: 128/Downstream/347204
Upstream sequence
ATGATATTCTAGGTTACTGAGGCACTCATTAGGCCCTGGGCAAATCTAAACATGCAGTTCTTTTCCGTACACTCTACATCTGCCTGTGTCACCCCCGGCT
Downstream sequence
tcacagagatatagctcagaacctcacatatagcgtgtccacagctgccttctttcaaaaactgctcttcgtttcattccctaatttggtaaagaataac
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.