Basic Information
VIS ID
TVIS10009486
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
1936
Orient
-
Integrated sequence
CTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTA| |CTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCC
Host Sequence
Chromosome
chr1
Cytoband
q42.12
Reference genome
GRCh37/hg19
Start
226166757/225979056 (Hg38)
End
226166757/225979056 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1H
Nearest miRNA
hsa-mir-101-1/Upstream/56914; hsa-mir-1182/Downstream/1962534;
Nearest TSS
ENST00000473358/Upstream/37567; ENST00000366814/Downstream/20275;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/39061, chr1-CpG: 51/Downstream/20046
Nearby gene
LEFTY2(-37674) ; SDE2(+3646) ;
Nearest cancer related gene
LEFTY2(TSG, -37674) ;
Upstream sequence
atattttgaatatttttgggttaaataaaatatattgctaaaattaatttcacctgcttctttgtaAttttttttttttttttttttttttttttttgag
Downstream sequence
atgaggtctcactctgtcgcccaggctggagttgcagtgacgccttcaaagttcactgtatcattggccgggcgtggtggctcatgcctataatcccagc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate