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VISDB
Viral Integration Site DataBase
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TVIS10009545
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10009545
Fusion event
HBV-chr15 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1829
Orient
+
Integrated sequence
GACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCA| |CCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTT
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
90454143/89910911 (Hg38)
End
90454143/89910911 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARPIN
;
ARPIN-AP3S2
miRNAs that regulate target gene
hsa-mir-6807-5p
;
hsa-mir-7703
;
hsa-mir-6720-5p
;
hsa-mir-6512-3p
;
hsa-mir-6751-3p
;
hsa-mir-769-5p
;
hsa-mir-1199-5p
;
hsa-mir-766-3p
;
hsa-mir-6849-3p
;
hsa-mir-4302
;
hsa-mir-3681-3p
;
hsa-mir-216a-3p
;
hsa-mir-128-3p
;
hsa-mir-4293
;
hsa-mir-449b-3p
;
hsa-mir-508-5p
;
hsa-mir-19b-3p
;
hsa-mir-19a-3p
;
hsa-mir-6862-5p
;
hsa-mir-3945
;
hsa-mir-4253
;
hsa-mir-6774-5p
;
hsa-mir-635
;
hsa-mir-4716-5p
;
hsa-mir-3607-5p
;
hsa-mir-4735-3p
;
hsa-mir-18b-5p
;
hsa-mir-18a-5p
;
hsa-mir-548m
;
hsa-mir-4786-5p
;
hsa-mir-19b-3p
;
hsa-mir-19a-3p
;
hsa-mir-1247-3p
;
hsa-mir-1247-3p
;
hsa-mir-1292-3p
;
hsa-mir-140-3p
;
hsa-mir-1827
;
hsa-mir-1910-3p
;
hsa-mir-194-3p
;
hsa-mir-2467-3p
;
hsa-mir-2467-3p
;
hsa-mir-25-3p
;
hsa-mir-32-5p
;
hsa-mir-3612
;
hsa-mir-363-3p
;
hsa-mir-367-3p
;
hsa-mir-377-5p
;
hsa-mir-377-5p
;
hsa-mir-4257
;
hsa-mir-4257
;
hsa-mir-4453
;
hsa-mir-4537
;
hsa-mir-4538
;
hsa-mir-455-3p
;
hsa-mir-455-3p
;
hsa-mir-4640-5p
;
hsa-mir-4726-5p
;
hsa-mir-500a-3p
;
hsa-mir-5186
;
hsa-mir-6086
;
hsa-mir-6086
;
hsa-mir-6499-3p
;
hsa-mir-6499-3p
;
hsa-mir-6508-3p
;
hsa-mir-650
;
hsa-mir-6511a-5p
;
hsa-mir-6516-5p
;
hsa-mir-6516-5p
;
hsa-mir-6828-5p
;
hsa-mir-767-5p
;
hsa-mir-92a-3p
;
hsa-mir-92b-3p
;
hsa-mir-1273e
;
hsa-mir-4537
;
hsa-mir-5186
;
hsa-mir-6807-5p
Nearest miRNA
hsa-mir-10393/Upstream/26881; hsa-mir-1302-10/Downstream/95844;
Nearest TSS
ENST00000557528/Upstream/2498;
ENST00000559419/Downstream/1776;
Nearest CpG islands
None/Target,
chr15-CpG: 55/Upstream/16549
,
chr15-CpG: 70/Downstream/1419
Upstream sequence
CATTTCCCCTGGGGATGAAAGGGAAAGAAAGGATAGCCAGTTTTGTCAGTCCTCAGCAAATCTCACCCGTGTCTCCTATTTACCCAGCCCTGAGAAGGCT
Downstream sequence
GGGTACTGAGCAGCTCCTTTCCCCGTGCTTCCGACATAGGGATCTCCAAAGGGTCCCAAAGGCTGGGGCATTGCCCAGATGCCAGGAGGAACCTTgtcag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Sample Information
×
Sample name
734Ca
Sample type
Tumor
Gender
Female
CpG Island Information
×
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