VISDB Viral Integration Site DataBase

VIS ID

TVIS10009553

Fusion event

HBV-CFDP1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1742

Orient

-

Integrated sequence

CCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGT| |TGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATC

Chromosome

chr16

Cytoband

q23.1

Reference genome

Start

End

75368094/75334196 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-513a-5p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p

Nearest miRNA

hsa-mir-1225/Upstream/5303774; hsa-mir-11401/Downstream/1534740;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/67908, chr16-CpG: 80/Downstream/98756

Upstream sequence

GTATGGAAATACCAGCTACCTCAAGATCATCTTCAAGGGCCAATCATTGCCAGCCCCACCCACTCTCACACATCCAAGACTTGACTTGCCTCCTCCTCGC

Downstream sequence

AGCaccctaaccctaaccctaaccctaaccctaaccctaaccctGCAGCTAAGCAAACGTTTGCTTCTTTTTTCCCCTTCTGTAATGAATTAATCCCAAC