Basic Information
VIS ID
TVIS10009575
Fusion event
HBV-chr18 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|middle S protein|
Start
121
Orient
+
Integrated sequence
ACTCTGCAAGATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGT| |CAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTT
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
GRCh37/hg19
Start
5078152/5078153 (Hg38)
End
5078152/5078153 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-6718/Upstream/1192721; hsa-mir-1-2/Downstream/762542;
Nearest TSS
ENST00000575820/Upstream/73616; ENST00000583985/Downstream/3029;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/622506, chr18-CpG: 80/Downstream/118091
Nearby gene
DLGAP1(-622886) ; AKAIN1(+65520) ;
Upstream sequence
ttttttttttgtttttgttttttgagacggagtctcgctctgtcgcccaggccggactgcggactgcagtggcgcaatctcggctcactgcaagctccgc
Downstream sequence
ctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccgcgcccggctaattttttgtatttttagtagag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate