Basic Information
VIS ID
TVIS10009582
Fusion event
HBV-LOC105372323 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
545
Orient
-
Integrated sequence
TTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGG| |AACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGG
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
21786998/21604196 (Hg38)
End
21786998/21604196 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372323
Nearest miRNA
hsa-mir-10395/Upstream/1204842; hsa-let-7e/Downstream/13518504;
Nearest TSS
ENST00000633603/Upstream/9568; ENST00000596471/Downstream/146516;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/17212, chr19-CpG: 22/Downstream/73794
Nearby gene
ZNF429(-65919) ; ZNF100(+119845) ;
Upstream sequence
ctggctaagcagcatccaaaactcctgtaataggacccagtctggtgaacctgagggtgaaaatgagagtgagagtgcactgcaagggaggaaatgagag
Downstream sequence
ggaaagcattgaaaccaactcctttggagtgcacgataaagaatttttttaaaaaaggatttagaggtgattatgggatgaaactggatgttcaaaagtt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate