Basic Information
VIS ID
TVIS10009602
Fusion event
HBV-chr20 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
156
Orient
+
Integrated sequence
CCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAAC| |ATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACT
Host Sequence
Chromosome
chr20
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
23780601/23799964 (Hg38)
End
23780601/23799964 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/5329273; hsa-mir-1-1/Downstream/2408222;
Nearest TSS
ENST00000382410/Upstream/1823; ENST00000457274/Downstream/26767;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/161915, chr20-CpG: 25/Downstream/188548
Nearby gene
CST1(-49027) ; CST2(+23803) ;
Upstream sequence
TCTCCCATCTCCTTCTTGCTCATGGTCCCTTCTGGAGGTCAGAGGTATGAATGCCAGGGAAAATCTACTTTTGTTCCTGCGGTTAATAGGGACACGTggc
Downstream sequence
tgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcaggagatcgagaccatcttggctaacacggtga
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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