Basic Information
VIS ID
TVIS10009608
Fusion event
HBV-chr21 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1823
Orient
-
Integrated sequence
TTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACT| |TTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAA
Host Sequence
Chromosome
chr21
Cytoband
q22.12
Reference genome
GRCh37/hg19
Start
36669075/35296777 (Hg38)
End
36669075/35296777 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1746049; hsa-mir-3197/Downstream/423938;
Nearest TSS
ENST00000624081/Upstream/160139; ENST00000457157/Downstream/168552;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/269815, chr21-CpG: 42/Downstream/590116
Nearby gene
RUNX1(-247480) ; MIR802(+423938) ;
Nearest cancer related gene
RUNX1(OG, -247480) ;
Upstream sequence
TTTTCTGTGACTTGTGTAAAGTAGAACAGACCAGTCCCCAAGAGGTTTTCAGACTCTTTTGGTTTGGAGGtgatacggtttggctgtgttcccacccaaa
Downstream sequence
tctcatcttgaattgtagctcccacaatccccatgtgtcatggaagaaccccgtgggaggtaattgaatcatgggggcaggttgttcctgcgctgttctc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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