Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10009615
Fusion event
HBV-CNTN6 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1689
Orient
-
Integrated sequence
GCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAAC| |GACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGG
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
Start
End
1214793/1173109 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Downstream/4077068;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/863899, chr3-CpG: 182/Downstream/925236
Upstream sequence
tatataccatattttctttatccatacatccattgatggacacttaaattgatctcatatcttagctattgtgaagaatgctgcaataaacataggtatg
Downstream sequence
CTCTCTTCTGGCTTTTCTGCCATCTGTGACATCTCTCCAGGCATACCGTAAGGAGAGGACATTTTGAAGGATCACTCTATTTGTTTCATCCTAGAAAAGT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.