Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10009625
Fusion event
HBV-FAM157A integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|precore/core protein|
Start
1814
Orient
-
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
End
197900330/198173459 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/498883;
Nearest TSS
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/15978, None/Downstream
Upstream sequence
AAATAACACTATAAATCTAACTTCTTTCTTTAAAAGAAAATGTGCTTATGCATTCATAACATCCATTAAGGGCACTGGGAAACTGGAAACCTGAATCCAC
Downstream sequence
agggttagggttagggttcgggtttagggttcaggtttatggttcgggttagggttcaggttaggtttctggttgggtttagtgttagggtttagggttc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.