Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10009627
Fusion event
HBV-FAM157A integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1811
Orient
-
Integrated sequence
AAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAG| |CACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATC
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
End
197900821/198173950 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/499374;
Nearest TSS
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/16469, None/Downstream
Upstream sequence
ttgagacagtcttgctctgtcgcccaggatggagtgcagtgatgtgatcttggctcactgcaacctctacctcccaggttaaagcgattctcatgcctca
Downstream sequence
gtgggtgagggtgaggatgaaggttaagggttaggtttaggggttagggttagggttagggttaagggttagggttagggttaagggttaagggtcaggg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.