Basic Information
VIS ID
TVIS10009633
Fusion event
HBV-chr4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|middle S protein|
Start
72
Orient
+
Integrated sequence
AATTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCC| |AGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACAT
Host Sequence
Chromosome
chr4
Cytoband
q31.22
Reference genome
GRCh37/hg19
Start
147154367/146233215 (Hg38)
End
147154367/146233215 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2889680; hsa-mir-1305/Downstream/175368;
Nearest TSS
ENST00000502981/Upstream/8658; ENST00000510996/Downstream/8591;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/56805, chr4-CpG: 84/Downstream/288724
Nearby gene
LSM6(-43154) ; SLC10A7(+20770) ;
Upstream sequence
CAGGGCTTTACAAGTTAAATGTAAATATACATGTACAAATGCAAAAATAAGAAAATATTCTTTAATAAGTCAAAAAAATAGGCAACTTAATCACCTCTTA
Downstream sequence
ggcgcccgccaccgcgcccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaagatggtctcgatctcctgaccttgtgatcc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate