VISDB Viral Integration Site DataBase

VIS ID

TVIS10009672

Fusion event

HBV-BTNL9 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

611

Orient

-

Integrated sequence

GACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCAT| |CCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGG

Chromosome

chr5

Cytoband

q35.3

Reference genome

Start

End

180473053/181046053 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4326 ; hsa-mir-646

Nearest miRNA

hsa-mir-10397/Upstream/2569; hsa-mir-4638/Downstream/176513;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/75490, chr5-CpG: 131/Downstream/6532

Upstream sequence

GGCCGCTGGCCTGATCCGGAGACCCAGGGCTGCCTCCAGGTCCGGACGCGGGGCGTCGGGCTCCGGGCACCACGAATGCCGGACGTGAAGGGGAGGACGG

Downstream sequence

CATCTccccagcccccaacacctcctccaccatctccccagcccccaacacctcctccaccatctccccagcccccaacacctcctccaccatctcccca