VISDB Viral Integration Site DataBase

VIS ID

TVIS10009686

Fusion event

HBV-GMPR integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

1028

Orient

+

Integrated sequence

ACAAAAAATCAAAGAATGTTTTAGAAAACTTCCTATTAACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCT| |TTTACACAATGTGGTTATCCTGCGTTGATGCCTTTGTATGCATGTATTCAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTA

Chromosome

chr6

Cytoband

p22.3

Reference genome

Start

End

16249387/16249156 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-3187-5p ; hsa-mir-5189-5p ; hsa-mir-4793-3p ; hsa-mir-1285-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-502-5p ; hsa-mir-7111-3p ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-210-5p ; hsa-mir-4749-3p ; hsa-mir-6845-3p ; hsa-mir-106b-3p ; hsa-mir-1915-5p ; hsa-mir-6841-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-6760-3p

Nearest miRNA

hsa-mir-3691/Upstream/107532; hsa-mir-10398/Downstream/2322628;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/10156, chr6-CpG: 30/Downstream/78782

Upstream sequence

agaccagcctaggcaacatggaaaaacccagtctctacaaatgtaccccctccaaaaaaaaaaaaaaagcccggtcctgtggtgtgtgcctgtagtcctg

Downstream sequence

CATTTTGTAAtttttttttttttttttttttttgagatggagtttcactcttgttgcccaggctggagtgcaatggcaccatcttggctcaccgcaacct